ButhA.00438.a: Nucleoside diphosphate kinase (NDK) (NDP kinase) (EC 2.7.4.6) (Nucleoside-2-P kinase) (BTH_I2231) (ndk)
Target Characteristics
| from organism: | Burkholderia thailandensis E264 |
| most recent status: | in PDB |
| center reference id: | ButhA.00438.a |
| is community request: | True |
| associated disease: | |
| NIH risk group: | 3 |
| is select agent: | False |
| NIH priority pathogens category: |
IIIB |
Ordering Clones & Proteins
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Clones*
| CENTER REFERENCE ID |
DOMAIN/REGION DESCRIPTION |
INFO | AA START |
AA STOP |
ORDER MATERIAL |
|---|---|---|---|---|---|
| ButhA.00438.a.A1.GE32739 | full length | 1 | 141 | GE32739 |
* SSGCID clones represent un-induced expression constructs which have been verified by sequencing from vector primers. Clones may contain a tag, such as N-term 6xHis. Get sequence information
using the button in the "info" column.
Proteins
| CENTER REFERENCE ID |
DOMAIN/REGION DESCRIPTION |
INFO | AA START |
AA STOP |
ORDER MATERIAL |
|---|---|---|---|---|---|
| ButhA.00438.a.A1.PS01187 | full length | 1 | 141 |
Structures
4DUT
Deposited: 2/22/2012
Determination: XRay
Diffraction Image
Clone: ButhA.00438.a.A1.GE32739
Protein: ButhA.00438.a.A1.PS01187
4EK2
Deposited: 4/9/2012
Determination: XRay
Diffraction Image
Clone: ButhA.00438.a.A1.GE32739
Protein: ButhA.00438.a.A1.PS01187
4HR2
Deposited: 10/26/2012
Determination: XRay
Diffraction Image
Clone: ButhA.00438.a.A1.GE32739
Protein: ButhA.00438.a.A1.PS01187
Publications by SSGCID
Combining functional and structural genomics to sample the essential Burkholderia structome.
Abendroth J, Armour B, Barrett L, Baugh L, Begley DW, Buchko GW, Choi R, Clifton MC, Dieterich SH, Dranow DM, Edwards TE, Fairman JW, Fox D, Gallagher LA, Gardberg AS, Gillespie A, Manoil C, Myler PJ, Nakazawa-Hewitt S, Napuli A, Nguyen MT, Patrapuvich R, Phan I, Stacy R, Staker BL, Stewart LJ, Van Voorhis WC
PLoS ONE - 2012
volume 8, issue 1, pages e53851
PMID: 23382856; PMCID: PMC3561365
PDB:
3D63,
3DAH,
3EIZ,
3EJ2,
3EK2,
3EZO,
3F0F,
3FTP,
3GK0,
3GK3,
3GVF,
3GWA,
3GWE,
3IML,
3SZ8,
3T4C,
3TML,
3TMQ,
3TXY,
3U7J,
3UE9,
3UK1,
3UK2,
3UND,
3UPT,
3URR,
3UW1,
3UW2,
3UW3,
3V2I,
3V7N,
3V8H,
3V9O,
3V9P,
3VAV,
4DDO,
4DFE,
4DHE,
4DHK,
4DUT,
4DZ4,
4E4T,
4E51,
4EFI,
4EG0,
4EGJ,
4EK2,
4EQY,
4EWG,
4EX5,
4EXQ,
4F2G,
4F32,
4F3N,
4F3Y,
4F4H,
4F7D,
4FK8,
4FRY,
4G1K,
4G67,
4G6Z,
4GHK,
4H3Y,
4H3Z,
4H4G
External Resources
| Resource | Reference ID |
|---|---|
| OrthoMCL: | OG5_126708 |
| PATRIC ID: | fig|271848.6.peg.5051 |
| RefSeq: | YP_442752.1 |
| UniProt: | Q2SWE7 |
Enzyme & Pathway Information
| Pathway | Pathway ID | EC Number |
|---|---|---|
| superpathway of purine nucleotides de novo biosynthesis II | DENOVOPURINE2-PWY | 2.7.4.6 |
| ppGpp biosynthesis | PPGPPMET-PWY | 2.7.4.6 |
| superpathway of histidine, purine, and pyrimidine biosynthesis | PRPP-PWY | 2.7.4.6 |
| superpathway of pyrimidine ribonucleotides de novo biosynthesis | PWY0-162 | 2.7.4.6 |
| salvage pathways of pyrimidine ribonucleotides | PWY0-163 | 2.7.4.6 |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | PWY0-166 | 2.7.4.6 |
| pyrimidine ribonucleotides interconversion | PWY-5687 | 2.7.4.6 |
| superpathway of guanosine nucleotides de novo biosynthesis II | PWY-6125 | 2.7.4.6 |
| superpathway of adenosine nucleotides de novo biosynthesis II | PWY-6126 | 2.7.4.6 |
| pyrimidine deoxyribonucleotides de novo biosynthesis III | PWY-6545 | 2.7.4.6 |
| superpathway of purine nucleotide salvage | PWY66-409 | 2.7.4.6 |
| UTP and CTP de novo biosynthesis | PWY-7176 | 2.7.4.6 |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | PWY-7184 | 2.7.4.6 |
| pyrimidine deoxyribonucleotides de novo biosynthesis II | PWY-7187 | 2.7.4.6 |
| superpathway of pyrimidine ribonucleosides salvage | PWY-7196 | 2.7.4.6 |
| pyrimidine deoxyribonucleotide phosphorylation | PWY-7197 | 2.7.4.6 |
| pyrimidine deoxyribonucleotides de novo biosynthesis IV | PWY-7198 | 2.7.4.6 |
| superpathway of pyrimidine deoxyribonucleoside salvage | PWY-7200 | 2.7.4.6 |
| CMP phosphorylation | PWY-7205 | 2.7.4.6 |
| superpathway of pyrimidine nucleobases salvage | PWY-7208 | 2.7.4.6 |
| pyrimidine deoxyribonucleotides biosynthesis from CTP | PWY-7210 | 2.7.4.6 |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | PWY-7211 | 2.7.4.6 |
| adenosine deoxyribonucleotides de novo biosynthesis II | PWY-7220 | 2.7.4.6 |
| guanosine ribonucleotides de novo biosynthesis | PWY-7221 | 2.7.4.6 |
| guanosine deoxyribonucleotides de novo biosynthesis II | PWY-7222 | 2.7.4.6 |
| purine deoxyribonucleosides salvage | PWY-7224 | 2.7.4.6 |
| guanosine deoxyribonucleotides de novo biosynthesis I | PWY-7226 | 2.7.4.6 |
| adenosine deoxyribonucleotides de novo biosynthesis | PWY-7227 | 2.7.4.6 |
| superpathway of guanosine nucleotides de novo biosynthesis I | PWY-7228 | 2.7.4.6 |
| superpathway of adenosine nucleotides de novo biosynthesis I | PWY-7229 | 2.7.4.6 |
| superpathway of purine nucleotides de novo biosynthesis I | PWY-841 | 2.7.4.6 |
Sequences
These sequences are the native gene sequence; sequences of constructs derived from these sequences may differ due to codon optimization or other protocols.
To find the specific sequence of any material you may have ordered, click on the "more" button next to the name of that material.
AA Sequence
MALERTLSII KPDAVAKNVI GQIYSRFENA GLKIVAARMA HLSRADAEKF YAVHAERPFF KDLVEFMISG PVMIQVLEGE DAILKNRDLM GATDPKKAEK GTIRADFADS IDANAVHGSD APETARVEIA FFFPEMNVYS R
NT Sequence
atggcactcg agcgcaccct gtcgatcatc aagccggatg cggtggcgaa gaacgtgatc ggccagatct acagccgttt cgaaaacgcc ggcctgaaga tcgtggcggc gcgcatggcg cacctgtcgc gcgccgatgc ggagaagttc tacgccgtgc acgccgagcg tccgttcttc aaggatctcg tcgaattcat gatctcgggc ccggtgatga tccaggttct ggaaggcgag gacgcgatcc tgaagaaccg cgacctgatg ggcgcgacgg atccgaagaa ggcggaaaag ggcacgatcc gcgccgactt cgcggatagc atcgacgcga acgccgtgca cggctcggac gcaccggaaa cggcgcgcgt cgagatcgcg ttcttcttcc cggaaatgaa cgtctactcg cgctaa